Protein ZmEREB80 | |
---|---|
Information | |
TF Name: | ZmEREB80 |
Species: | Maize |
TF Family: | AP2/ERF-ERF |
Gene Name(Synonym): | EREB80 |
Uniprot ID: | A0A1D6PDQ1 |
Subgenome: | 2 |
ZmEREB80 is a protein in the AP2/ERF-ERF family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d011499 | DAPseq | sequence | fimo | position | |
Zm00001d011499 | DAPseq | sequence | fimo | position | |
Zm00001d011499 | ChIPseq | sequence | fimo | position | |
Zm00001d011499 | PChIPseq | sequence | fimo | position |
MSRSRTVRIFWDDPDLTDSSGDDEGCGARRVGRMVRELAPAPAPAPAALPVPDQCNPGDGDRGRKAGVAGPGVCSGARRR
LAKGAGGAASTKFRGVRRRPWGKFAAEIRDPWRGVRVWLGTFDTAEEAARVYDAAAVQLRGANATTNFSASAATNCGSGS
GAGAGQDPATTPAAGYESGAESSPTSVLRKVPSLSSLAEDDSDAPAAQRRSLAVLEEEELGEFVPFEDAPVYATSGFWDF
EPDAGFLYAEPSSPEASWNAAAAVAEPASSDDAPSWAASPVQENDYFQDLRDLFPLNRLPAIF
MSRSRTVRIFWDDPDLTDSSGDDEGCGARRVGRMVRELAPAPAPAPAALPVPDQCNPGDGDRGRKAGVAGPGVCSGARRR
LAKGAGGAASTKFRGVRRRPWGKFAAEIRDPWRGVRVWLGTFDTAEEAARVYDAAAVQLRGANATTNFSASAATNCGSGS
GAGAGQDPATTPAAGYESGAESSPTSVLRKVPSLSSLAEDDSDAPAAQRRSLAVLEEEELGEFVPFEDAPVYATSGFWDF
EPDAGFLYAEPSSPEASWNAAAAVAEPASSDDAPSWAASPVQENDYFQDLRDLFPLNRLPAIF
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
GTCCACTCCACTCCCCCCAAAAAAC...
GTCCACTCCACTCCCCCCAAAAAACCTCGCCAAACCCCCAGAAACTCCCATCCCATCACCTCCATCCTCCGCACCACTCCTCCCCCTCCACCTCACGTCGCCACCGCACCGCCGCCGTTTCCCAGCTCTGCTCTCACAGGGTCTCCTCCTCGGCTTTCTCCACGCCACGCCACGCCACACCGCCGCTGCCACCTCCCTTCCTTCGTCTCCGGCCTTGTTCTTCGAGCCTTTTTCTTTATTATCGTCGGTGCTCCTGCTCCAGGACCTTCCGAAGCTAGCTCCCCGCTCCCTCTCGCCGAGGAGCCCGGAGTGTCGCTCACGGAGCTCGAAAACCGTTATAGCTACAGCGTCCCCGTCGGGGCCGCGGCAGCAGCGCCTGCGTCCGTAGTACTACGAACTCGGCAGGGGACAACAGGACGGGCGCGCGGCCTGACTGCTGCTGCCTCTCTCTGCTTTCAGCTACTCGTAGCTGCTGCTGCATTTCCGCTGCTCTTTTTAAAGAGCCCGTCGTCTTTACTGCGGCCATTCCCTCCTCCCCCTTTCTTCCTCCGATCCCCTGCGCCCCGGTCTGCCTTCCTGCTCGCATCGCCTCGCCTCCCTCCCTTCCCGACCCTTTCTTTGCTCTTTATTCCCCTGCCGATCCGCAGTGCAGGAGCCAGGCAGGAGGGAAATCCACCCGGCCGTCCGTTCCGATCGCGCGCCCCCCCTGCAGCTTCTTTTCCTGCTGGGGTCAGGGTAGCAGCCTGCATGCAGGGCCTGGTTTGGTTGGGGTTCTCGTGTCATCTCAACGCCAGGGAGGTACTTGCTCGTCTGTCTCTCCTTGCCTGTGCGCTTCGGTTATTAGCTAGCTAGCTTGGGTCTAGTCTAGTGTAACTCCCGGCCGCCATCTTTGCTGTACTTCGTTCGTGCCATGTCGCGCTCGCGCACGGTGCGGATCTTCTGGGACGATCCTGACCTGACCGATTCCTCCGGCGACGACGAGGGCTGCGGAGCCCGGAGGGTCGGCAGAATGGTGAGGGAGCTGGCACCAGCACCAGCACCAGCACCGGCGGCTCTTCCCGTGCCGGATCAGTGCAACCCCGGGGACGGCGACCGCGGGAGGAAGGCCGGCGTCGCTGGTCCCGGCGTGTGCAGCGGGGCGCGGAGACGGCTGGCCAAGGGCGCCGGTGGCGCGGCGAGCACCAAGTTCCGCGGCGTGCGGAGGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCGTGGCGCGGCGTGCGCGTCTGGCTCGGCACCTTCGACACCGCGGAGGAGGCCGCACGCGTCTACGACGCCGCCGCCGTCCAGCTCCGCGGGGCCAACGCCACCACCAACTTCTCCGCGTCCGCCGCCACTAACTGCGGCTCCGGCTCCGGGGCCGGGGCCGGGCAGGACCCGGCGACGACACCGGCGGCGGGCTACGAGTCCGGCGCGGAGTCGTCGCCGACGTCCGTGCTCCGCAAGGTCCCCTCCCTGTCCTCCCTCGCCGAGGACGACTCGGACGCGCCGGCCGCCCAGCGCCGCAGCCTGGCCGTCCTCGAGGAGGAGGAGCTGGGCGAGTTCGTGCCGTTCGAGGACGCGCCCGTCTACGCCACCAGCGGCTTCTGGGACTTCGAGCCCGACGCGGGGTTCCTCTACGCCGAGCCGTCGTCGCCGGAGGCGTCGTGGAATGCCGCCGCCGCCGTCGCCGAGCCCGCCTCGTCTGACGACGCGCCCAGCTGGGCCGCGTCGCCGGTGCAGGAGAACGACTACTTCCAGGACCTGCGCGACCTCTTCCCGCTAAACCGGCTTCCCGCGATTTTCTGAAAACAGGCGGACGGTGAACGCCGGAACCGGGAACGGCGCCGTTGGTCCGTCGTCGAGAGTGTGTTGTGTCTCGTGCCTACGTGCACTGTGTACTTGTACGCCTTTCCCACGCTGTTCGTGTTACTATCTTCGAGTCGATGAGAAATGTAATATGCTGCCGAATGCCGATGAGCACGTAGAGTTTTGATGTGCGCTGGAGTCTACGAACTAGTGTATCGATACGTGAATGGCTTTTTTTTTAGCACAGTCTACAATTGATGCTGGTGTACTTGTACCGTCC
MSRSRTVRIFWDDPDLTDSSGDDEGCGARRVGRMVRELAPAPAPAPAALPVPDQCNPGDGDRGRKAGVAGPGVCSGARRR
LAKGAGGAASTKFRGVRRRPWGKFAAEIRDPWRGVRVWLGTFDTAEEAARVYDAAAVQLRGANATTNFSASAATNCGSGS
GAGAGQDPATTPAAGYESGAESSPTSVLRKVPSLSSLAEDDSDAPAAQRRSLAVLEEEELGEFVPFEDAPVYATSGFWDF
EPDAGFLYAEPSSPEASWNAAAAVAEPASSDDAPSWAASPVQENDYFQDLRDLFPLNRLPAIF
CCACTCCCCCCAAAAAACCTCGCCA...
CCACTCCCCCCAAAAAACCTCGCCAAACCCCCAGAAACTCCCATCCCATCACCTCCATCCTCCGCACCACTCCTCCCCCTCCACCTCACGTCGCCACCGCACCGCCGCCGTTTCCCAGCTCTGCTCTCACAGGGTCTCCTCCTCGGCTTTCTCCACGCCACGCCACGCCACACCGCCGCTGCCACCTCCCTTCCTTCGTCTCCGGCCTTGTTCTTCGAGCCTTTTTCTTTATTATCGTCGGTGCTCCTGCTCCAGGACCTTCCGAAGCTAGCTCCCCGCTCCCTCTCGCCGAGGAGCCCGGAGTGTCGCTCACGGAGCTCGAAAACCGTTATAGCTACAGCGTCCCCGTCGGGGCCGCGGCAGCAGCGCCTGCGTCCGTAGTACTACGAACTCGGCAGGGGACAACAGGACGGGCGCGCGGCCTGACTGCTGCTGCCTCTCTCTGCTTTCAGCTACTCGTAGCTGCTGCTGCATTTCCGCTGCTCTTTTTAAAGAGCCCGTCGTCTTTACTGCGGCCATTCCCTCCTCCCCCTTTCTTCCTCCGATCCCCTGCGCCCCGGTCTGCCTTCCTGCTCGCATCGCCTCGCCTCCCTCCCTTCCCGACCCTTTCTTTGCTCTTTATTCCCCTGCCGATCCGCAGTGCAGGAGCCAGGCAGGAGGGAAATCCACCCGGCCGTCCGTTCCGATCGCGCGCCCCCCCTGCAGCTTCTTTTCCTGCTGGGGTCAGGGTAGCAGCCTGCATGCAGGGCCTGGTTTGGTTGGGGTTCTCGTGTCATCTCAACGCCAGGGAGGTACTTGCTCGTCTGTCTCTCCTTGCCTGTGCGCTTCGGTTATTAGCTAGCTAGCTTGGGTCTAGTCTAGTGTAACTCCCGGCCGCCATCTTTGCTGTACTTCGTTCGTGCCATGTCGCGCTCGCGCACGGTGCGGATCTTCTGGGACGATCCTGACCTGACCGATTCCTCCGGCGACGACGAGGGCTGCGGAGCCCGGAGGGTCGGCAGAATGGTGAGGGAGCTGGCACCAGCACCAGCACCAGCACCGGCGGCTCTTCCCGTGCCGGATCAGTGCAACCCCGGGGACGGCGACCGCGGGAGGAAGGCCGGCGTCGCTGGTCCCGGCGTGTGCAGCGGGGCGCGGAGACGGCTGGCCAAGGGCGCCGGTGGCGCGGCGAGCACCAAGTTCCGCGGCGTGCGGAGGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCGTGGCGCGGCGTGCGCGTCTGGCTCGGCACCTTCGACACCGCGGAGGAGGCCGCACGCGTCTACGACGCCGCCGCCGTCCAGCTCCGCGGGGCCAACGCCACCACCAACTTCTCCGCGTCCGCCGCCACTAACTGCGGCTCCGGCTCCGGGGCCGGGGCCGGGCAGGACCCGGCGACGACACCGGCGGCGGGCTACGAGTCCGGCGCGGAGTCGTCGCCGACGTCCGTGCTCCGCAAGGTCCCCTCCCTGTCCTCCCTCGCCGAGGACGACTCGGACGCGCCGGCCGCCCAGCGCCGCAGCCTGGCCGTCCTCGAGGAGGAGGAGCTGGGCGAGTTCGTGCCGTTCGAGGACGCGCCCGTCTACGCCACCAGCGGCTTCTGGGACTTCGAGCCCGACGCGGGGTTCCTCTACGCCGAGCCGTCGTCGCCGGAGGCGTCGTGGAATGCCGCCGCCGCCGTCGCCGAGCCCGCCTCGTCTGACGACGCGCCCAGCTGGGCCGCGTCGCCGGTGCAGGAGAACGACTACTTCCAGGACCTGCGCGACCTCTTCCCGCTAAACCGGCTTCCCGCGATTTTCTGAAAACAGGCGGACGGTGAACGCCGGAACCGGGAACGGCGCCGTTGGTCCGTCGTCGAGAGTGTGTTGTGTCTCGTGCCTACGTGCACTGTGTACTTGTACGCCTTTCCCACGCTGTTCGTGTTACTATCTTCGAGTCGATGAGAAATGTAATATGCTGCCGAATGCCGATGAGCACGTAGAGTTTTGATGTGCGCTGGAGTCTACGAA
MSRSRTVRIFWDDPDLTDSSGDDEGCGARRVGRMVRELAPAPAPAPAALPVPDQCNPGDGDRGRKAGVAGPGVCSGARRR
LAKGAGGAASTKFRGVRRRPWGKFAAEIRDPWRGVRVWLGTFDTAEEAARVYDAAAVQLRGANATTNFSASAATNCGSGS
GAGAGQDPATTPAAGYESGAESSPTSVLRKVPSLSSLAEDDSDAPAAQRRSLAVLEEEELGEFVPFEDAPVYATSGFWDF
EPDAGFLYAEPSSPEASWNAAAAVAEPASSDDAPSWAASPVQENDYFQDLRDLFPLNRLPAIF
ATGTCGCGCTCGCGCACGGTGCGGA...
ATGTCGCGCTCGCGCACGGTGCGGATCTTCTGGGACGATCCTGACCTGACCGATTCCTCCGGCGACGACGAGGGCTGCGGAGCCCGGAGGGTCGGCAGAATGGTGAGGGAGCTGGCACCAGCACCAGCACCAGCACCGGCGGCTCTTCCCGTGCCGGATCAGTGCAACCCCGGGGACGGCGACCGCGGGAGGAAGGCCGGCGTCGCTGGTCCCGGCGTGTGCAGCGGGGCGCGGAGACGGCTGGCCAAGGGCGCCGGTGGCGCGGCGAGCACCAAGTTCCGCGGCGTGCGGAGGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCGTGGCGCGGCGTGCGCGTCTGGCTCGGCACCTTCGACACCGCGGAGGAGGCCGCACGCGTCTACGACGCCGCCGCCGTCCAGCTCCGCGGGGCCAACGCCACCACCAACTTCTCCGCGTCCGCCGCCACTAACTGCGGCTCCGGCTCCGGGGCCGGGGCCGGGCAGGACCCGGCGACGACACCGGCGGCGGGCTACGAGTCCGGCGCGGAGTCGTCGCCGACGTCCGTGCTCCGCAAGGTCCCCTCCCTGTCCTCCCTCGCCGAGGACGACTCGGACGCGCCGGCCGCCCAGCGCCGCAGCCTGGCCGTCCTCGAGGAGGAGGAGCTGGGCGAGTTCGTGCCGTTCGAGGACGCGCCCGTCTACGCCACCAGCGGCTTCTGGGACTTCGAGCCCGACGCGGGGTTCCTCTACGCCGAGCCGTCGTCGCCGGAGGCGTCGTGGAATGCCGCCGCCGCCGTCGCCGAGCCCGCCTCGTCTGACGACGCGCCCAGCTGGGCCGCGTCGCCGGTGCAGGAGAACGACTACTTCCAGGACCTGCGCGACCTCTTCCCGCTAAACCGGCTTCCCGCGATTTTCTGA
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